NAME

       subindel - toolkit for processing next-gen sequencing data

DESCRIPTION

       SubIndel: detect short and long indels

   Usage:
              subindel  -i  <SAM  file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I
              <max indel length>} {--paired-end}

   Example:
              subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end

AUTHOR

        This manpage was written by Alexandre Mestiashvili for the Debian distribution and
        can be used for any other usage of the program.

subindel 2.0.3                                     March 2023                                        SUBINDEL(1)