NAME

       pxtlate - translate DNA alignment to amino acids

SYNOPSIS

       pxtlate [OPTIONS]...

DESCRIPTION

       Translate  DNA  alignment  to amino acids.  This will take fasta, fastq, phylip, and nexus formats from a
       file or STDIN.  NOTE: assumes sequences are in frame.

OPTIONS

       -s, --seqf=FILE
              input nucleotide sequence file, STDIN otherwise

       -t, --table=STRING
              which translation table to use. currently available: 'std' (standard, default)  'vmt'  (vertebrate
              mtDNA) 'ivmt' (invertebrate mtDNA) 'ymt' (yeast mtDNA)

       -o, --outf=FILE
              output aa sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph F. Walker, Joseph W. Brown, Stephen A. Smith (blackrim)

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2015-2024 FePhyFoFum License GPLv3

pxtlate 1.3.1                                       June 2024                                         PXTLATE(1)