NAME

       pxnj - basic neighbour-joining tree maker

SYNOPSIS

       pxnj [OPTIONS]...

DESCRIPTION

       Basic neighbour-joining tree maker.  This will take fasta, fastq, phylip, and nexus inputs from a file or
       STDIN.

OPTIONS

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -n, --nthreads=INT
              number of threads, default=1

       -o, --outf=FILE
              output newick file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph F. Walker, Joseph W. Brown, Stephen A. Smith (blackrim)

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2015-2021 FePhyFoFum License GPLv3

pxnj 1.2                                            June 2021                                            PXNJ(1)