NAME

       pxcltr - general tree cleaner

SYNOPSIS

       pxcltr [OPTIONS]...

DESCRIPTION

       General  tree cleaner.  Removes annotations (node labels), 'knuckles' (2-degree nodes), and root edges to
       generate a 'vanilla' newick representation.  By default removes all properties.  Alternatively  choose  1
       property.   This  will take a newick- or nexus-formatted tree from a file or STDIN.  Output is written in
       newick format.

OPTIONS

       -t, --treef=FILE
              input treefile, STDIN otherwise

       -r, --root
              remove root edge (if present)

       -l, --labels
              remove internal node labels

       -k, --knuckles
              remove 2-degree internal nodes

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2024 FePhyFoFum License GPLv3

pxcltr 1.3.1                                        June 2024                                          PXCLTR(1)