NAME

       ktGetTaxInfo - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Description:

              Retrieves  taxonomy information for accessions or taxonomy IDs (as arguments or the first field of
              <stdin>, separated by whitespace). If the input is a number, it is assumed to be  a  taxonomy  ID;
              otherwise  it will be considered an accession or sequence ID containing an accession in the fourth
              field of pipe notation (e.g. "gi|12345|xx|ABC123.1|", ignoring fasta/fastq tag markers [>,@]).  If
              taxonomy  information  was  not  found  for  a  given input line, the output line will be only the
              taxonomy ID, which will be 0 if it was looked up from an accession but not found.

              Output fields are: taxID  depth  parent  rank  name

       Usage:

              ktGetTaxInfo [IDs ...] [< ID_list] > tax_info

              Command line example:

              ktGetTaxInfo A00001.1 "gi|2|emb|A00002.1|" 9606

              Fasta tag example:

              grep ">" sequence.fasta | ktGetTaxInfo

OPTIONS

       [-p]   Prepend tax info to the original lines (separated by tabs).

       [-a]   Append tax info to the original lines (separated by tabs).

       [-f] <integer>
              Field of accessions. [Default: '1']

       [-tax <string>
              Path to directory containing a taxonomy database to use.

ktGetTaxInfo 2.8                                    June 2021                                    KTGETTAXINFO(1)